Publications

2015

Murfee, Walter L, Richard S Sweat, Ken-ichi Tsubota, Feilim Mac Gabhann, Damir Khismatullin, and Shayn M Peirce. 2015. “Applications of Computational Models to Better Understand Microvascular Remodelling: A Focus on Biomechanical Integration across Scales”. Interface Focus 5 (2): 20140077. https://doi.org/10.1098/rsfs.2014.0077.

Microvascular remodeling is a common denominator for multiple pathologies and involves both angiogenesis, defined as the sprouting of new capillaries, and network patterning associated with the organization and connectivity of existing vessels. Much of what we know about microvascular remodeling at the network, cellular, and molecular scales has been derived from reductionist biological experiments, yet what happens when the experiments provide incomplete (or only qualitative) information? This review will emphasize the value of applying computational approaches to advance our understanding of the underlying mechanisms andeffects of microvascular remodeling. Examples of individual computational models applied to each of the scales will highlight the potential of answering specific questions that cannot be answered using typical biological experimentation alone. Looking into the future, we will also identify the needs and challenges associated with integrating computational models across scales.

Hassani-Ardekani, Hajar, Hanieh Niroomand-Oscuii, and Damir Khismatullin. 2015. “Computational Determination of the Detachment Time of the Leukocyte under Different Kinetic Dissociation Rate Parameters”. Journal of Biological Systems 23 (03): 457-69. https://doi.org/10.1142/S0218339015500230.

Three-dimensional simulation of the leukocyte detachment subjected to blood flow is presented. The initially captured leukocyte is modeled as a sphere adhered to the bottom wall of a cylindrical vessel via receptor/ligand bonds (P-selectin/PSGL-1). Ansys Parametric Design Language is used to create the geometrical model and couple the Navier-Stokes flow solver with structural equations and the Monte Carlo equation to define the stochastic breakage of the bonds. The assumption of equal forces on bonds has been ignored and the force on each bond is obtained from the balance between hydrodynamic forces and cellular viscoelasticity at every time step. In this model, catch-slip behavior of the P-selectin/PSGL-1 is considered by using the two-pathway dissociation model instead of the Bell model to define the rate of dissociation of each bond. Detachment time of the leukocyte is the time elapsed until all the bonds break. The effects of various values of blood inlet velocities, bond stiffness and kinetic properties of the catch bonds on the detachment time of the leukocyte are studied.

Chen, Chong, and Damir B Khismatullin. 2015. “Oxidized Low-Density Lipoprotein Contributes to Atherogenesis via Co-Activation of Macrophages and Mast Cells”. PloS One 10 (3): e0123088. https://doi.org/10.1371/journal.pone.0123088.

Oxidized low-density lipoprotein (OxLDL) is a risk factor for atherosclerosis, due to its role in endothelial dysfunction and foam cell formation. Tissue-resident cells such as macrophages and mast cells can release inflammatory mediators upon activation that in turn cause endothelial activation and monocyte adhesion. Two of these mediators are tumor necrosis factor (TNF)-α, produced by macrophages, and histamine, produced by mast cells. Static and microfluidic flow experiments were conducted to determine the number of adherent monocytes on vascular endothelium activated by supernatants of OxLDL-treated macrophages and mast cells or directly by OxLDL. The expression of adhesion molecules on activated endothelial cells and the concentration of TNF-α and histamine in the supernatants were measured by flow cytometry and enzyme-linked immunosorbent assay, respectively. A low dose of OxLDL (8 μg/ml), below the threshold for the clinical presentation of coronary artery disease, was sufficient to activate both macrophages and mast cells and synergistically increase monocyte-endothelium adhesion via released TNF-α and histamine. The direct exposure of endothelial cells to a much higher dose of OxLDL (80 μg/ml) had less effect on monocyte adhesion than the indirect activation via OxLDL-treated macrophages and mast cells. The results of this work indicate that the co-activation of macrophages and mast cells by OxLDL is an important mechanism for the endothelial dysfunction and atherogenesis. The observed synergistic effect suggests that both macrophages and mast cells play a significant role in early stages of atherosclerosis. Allergic patients with a lipid-rich diet may be at high risk for cardiovascular events due to high concentration of low-density lipoprotein and histamine in arterial vessel walls.

2014

Lan, Hongzhi, and Damir B Khismatullin. 2014. “Numerical Simulation of the Pairwise Interaction of Deformable Cells During Migration in a Microchannel”. Physical Review E 90 (1): 012705. https://doi.org/10.1103/PhysRevE.90.012705.

Leukocytes and other circulating cells deform and move relatively to the channel flow in the lateral and translational directions. Their migratory property is important in immune response, hemostasis, cancer progression, delivery of nutrients, and microfluidic technologies such as cell separation and enrichment, and flow cytometry. Using our three-dimensional computational algorithm for multiphase viscoelastic flow, we have investigated the effect of pairwise interaction on the lateral and translational migration of circulating cells in a microchannel. The numerical simulation data show that when two cells with the same size and small separation distance interact, repulsive interaction take place until they reach the same lateral equilibrium position. During this process, they undergo swapping or passing, depending on the initial separation distance between each other. The threshold value of this distance increases with cell deformation, indicating that the cells experiencing larger deformation are more likely to swap. When a series of closely spaced cells with the same size are considered, they generally undergo damped oscillation in both lateral and translational directions until they reach equilibrium positions where they become evenly distributed in the flow direction (self-assembly phenomenon). A series of cells with a large lateral separation distance could collide repeatedly with each other, eventually crossing the centerline and entering the other side of the channel. For a series of cells with different deformability, more deformable cells, upon impact with less deformable cells, move to an equilibrium position closer to the centerline. The results of our study show that the bulk deformation of circulating cells plays a key role in their migration in a microchannel.

Hoang, Nguyen H, Hakm Y Murad, Sithira H Ratnayaka, Chong Chen, and Damir B Khismatullin. 2014. “Synergistic Ablation of Liver Tissue and Liver Cancer Cells With High-Intensity Focused Ultrasound and Ethanol”. Ultrasound in Medicine and Biology 40 (8): 1869-81. https://doi.org/10.1016/j.ultrasmedbio.2014.02.026.

We investigated the combined effect of ethanol and high-intensity focused ultrasound (HIFU), first, on heating and cavitation bubble activity in tissue-mimicking phantoms and porcine liver tissues and, second, on the viability of HepG2 liver cancer cells. Phantoms or porcine tissues were injected with ethanol and then subjected to HIFU at acoustic power ranging from 1.2 to 20.5 W (HIFU levels 1-7). Cavitation events and the tememperature around the focal zone were measured with a passive cavitation detector and embedded type K thermocouples, respectively. HepG2 cells were subjected to 4% ethanol solution in growth medium (v/v) just before the cells were exposed to HIFU at 2.7, 8.7 or 12.0 W for 30 s. Cell viability was measured 2, 24 and 72 h post-treatment. The results indicate that ethanol and HIFU have a synergistic effect on liver cancer ablation as manifested by greater temperature rise and lesion volume in liver tissues and reduced viability of liver cancer cells. This effect is likely caused by reduction of the cavitation threshold in the presence of ethanol and the increased rate of ethanol diffusion through the cell membrane caused by HIFU-induced streaming, sonoporation and heating.

Chen, Chong, and Damir B Khismatullin. 2014. “Lipopolysaccharide Induces the Interactions of Breast Cancer and Endothelial Cells via Activated Monocytes”. Cancer Letters 345 (1): 75-84. https://doi.org/10.1016/j.canlet.2013.11.022.

The adhesion of circulating cancer cells to vascular endothelium is a key step in hematogenous metastasis. Cancer cell-endothelium interactions are mediated by cell adhesion molecules that can also be involved in the arrest of circulating leukocytes on endothelium in inflammation. Static and microfluidic flow adhesion assays as well as flow cytometry were conducted in this study to elucidate the role of circulating monocytes, bacterial lipopolysaccharide (LPS), and histamine in breast cancer cell adhesion to vascular endothelial cells. Tumor necrosis factor-α (TNF-α) released from LPS-treated monocytes triggered the expression of intercellular cell adhesion molecule-1 (ICAM-1) and vascular cell adhesion molecule-1 (VCAM-1) on endothelial cells. Histamine augmented the TNF-α effect, leading to a high number of arrested breast cancer cells under both static and shear flow conditions. LPS-treated monocytes were shown to enhance the arrest of breast cancer cells by anchoring the cancer cells to activated endothelial cells. This anchorage was achieved by binding cancer cell ICAM-1 to monocyte β2 integrins and binding endothelial ICAM-1 and VCAM-1 to monocyte β1 and β2 integrins. The results of this study imply that LPS is an important risk factor for cancer metastasis and that the elevated serum level of histamine further increases the risk of LPS-induced cancer metastasis. Preventing bacterial infections is essential in cancer treatment, and it is particularly vital for cancer patients affected by allergy.

2013

Coghill, Phillip A, Erin K Kesselhuth, Eddie A Shimp, Damir B Khismatullin, and David W Schmidtke. 2013. “Effects of Microfluidic Channel Geometry on Leukocyte Rolling Assays”. Biomedical Microdevices 15: 183-93. https://doi.org/10.1007/s10544-012-9715-y.

Microfluidic cell adhesion assays have emerged as a means to increase throughput as well as reduce the amount of costly reagents. However as dimensions of the flow chamber are reduced and approach the diameter of a cell (Dc), theoretical models have predicted that mechanical stress, force, and torque on a cell will be amplified. We fabricated a series of microfluidic devices that have a constant width:height ratio (10:1) but with varying heights. The smallest microfluidic device (200µm x 20µm) requires perfusion rates as low as 40 nL/min to generate wall shear stresses of 0.5 dynes/cm2. When neutrophils were perfused through P-selectin coated chambers at equivalent wall shear stress, rolling velocities decreased by approximately 70% as the ratio of cell diameter to chamber height (Dc/H) increased from 0.08 (H=100µm) to 0.40 (H=20µm). Three-dimensional numerical simulations of neutrophil rolling in channels of different heights showed a similar trend. Complementary studies with PSGL-1 coated microspheres and paraformaldehyde-fixed neutrophils suggested that changes in rolling velocity were related to cell deformability. Using interference reflection microscopy, we observed increases in neutrophil contact area with increasing chamber height (9-33%) and increasing wall shear stress (28-56%). Our results suggest that rolling velocity is dependent not only on wall shear stress but also on the shear stress gradient experienced by the rolling cell. These results point to the Dc/H ratio as an important design parameter of leukocyte microfluidic assays, and should be applicable to rolling assays that involve other cell types such as platelets or cancer cells.

Graziano, F, VM Russo, W Wang, D Khismatullin, and AJ Ulm. 2013. “3D Computational Fluid Dynamics of a Treated Vertebrobasilar Giant Aneurysm: A Multistage Analysis”. American Journal of Neuroradiology 34 (7): 1387-94. https://doi.org/10.3174/ajnr.A3373.

Background and Purpose: The treatment of vertebro-basilar junction (VBJ) giant aneurysms (GA) remains a challenging task in the neurosurgical practice and the gold standard therapy is still under debate. Through a detailed post-mortem study, the authors analyze the hemodynamic factors underlying the formation and recanalization of an aneurysm located at this particular site and its anatomic configuration.
Methods: An adult fixed cadaveric specimen with a known VBJ GA, characterized radiographically and treated with endovascular embolization, was studied. 3-D computational fluid dynamic (CFD) models were built based on the specific angio-architecture of the specimen and each step of the endovascular treatment was simulated.
Results: The 3-D CFD study showed at the neck region of the aneurysm, an area of hemodynamic stress (high wall shear stress, high static pressure, high flow velocity), matching the site of recanalization seen during the treatment period of the patient.
Conclusions: Aneurysm morphology, location and patient specific angio-architecture are the principal factors to be considered in the management of the VBJ giant aneurysms. The 3-D CFD study is valuable tool that, coupled with the neuro-radiological work-up, may add valuable insights in the treatment planning of complex cerebrovascular diseases.

Brown, Theodore P, Omid Forouzan, Sergey S Shevkoplyas, and Damir B Khismatullin. 2013. “Histamine Reduces GPIbα-Mediated Adhesion of Platelets to TNF-α-Activated Vascular Endothelium”. Thrombosis Research 131 (2): 150-57. https://doi.org/10.1016/j.thromres.2012.11.034.

Histamine and tumor necrosis factor-α (TNF-α) are critical mediators of acute and chronic inflammation that are generated by mast cells and macrophages in atherosclerotic lesions or systemically during allergic attacks. Both of them induce activation of vascular endothelium and thus may play a role in thrombosis. Here we studied the interplay between histamine and TNF-α in glycoprotein (GP) Ibα-mediated platelet adhesion to cultured human vascular endothelial cells under static and shear flow conditions. The stimulation of endothelial cells with histamine or TNF-α increased the number of adherent or slow rolling GP Ibα-coated microbeads or washed human platelets. However, the application of histamine to endothelium pre-activated by TNF-α inhibited GP Ibα-mediated platelet adhesion. These effects were found to be associated with changes in the concentration of ultra large von Willebrand factor (ULVWF) strings anchored to endothelium. The results of this study indicate that histamine released during mast cell degranulation may cause or inhibit thrombosis, depending on whether it acts on resting endothelial cells or on cells pre-activated by other inflammatory stimuli.

Chen, Chong, and Damir B Khismatullin. 2013. “Synergistic Effect of Histamine and TNF-α on Monocyte Adhesion to Vascular Endothelial Cells”. Inflammation 36: 309-19. https://doi.org/10.1007/s10753-012-9548-0.

The histamine level is high during allergic attacks, and patients with allergy may have chronic inflammatory conditions at which tumor necrosis factor (TNF)-α is extensively released by macrophages. Here, in vitro static and microfluidic flow assays were conducted to investigate the combined influence of histamine and TNF-α on adhesion of monocytic THP-1 cells to human umbilical vein endothelial cells (HUVEC). In a static assay, histamine stimulation of TNF-α-activated HUVEC elevated the number of attached THP-1 cells. In a flow assay, the number of crawling and firmly adherent THP-1 cells was higher on TNF-α + histamine activated HUVEC than on HUVEC activated by TNF-α alone. This synergistic effect of histamine and TNF-α is caused by the increased endothelial surface expression of intercellular adhesion molecule-1, vascular cell adhesion molecule-1, and E-selectin. Since the exposure of TNF-α-activated endothelium to histamine favors monocyte recruitment, it may be a serious risk factor for atherosclerosis and other chronic inflammatory disorders.